PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna27827.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family bHLH
Protein Properties Length: 724aa    MW: 80086.8 Da    PI: 6.0816
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna27827.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.4e-14478524455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  mrna27827.1-v1.0-hybrid 478 NHVLAERRRREKLNERFIILRSLVPFV-----TKMDKASILGDTIEYVKQLR 524
                              7999**********************8.....8*****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.9E-5611193IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.625474523IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-18476540IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-11478523IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-19478543IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.57E-15478528No hitNo description
SMARTSM003531.4E-17480529IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MATPPPSSSR LRGMLQSAVQ SVQWTYSLFW QICPQQGMLI WADGYYNGAI KTRKTVQPME  60
VSSEEASLQR SQQLRELYDT LSAGETNQPA RRPCAALSPE DLTESEWFYL MCVSFSFPPG  120
VGLPGKAYSR RQHVWLTGAN EVDSKTFSRA ILAKSARVQT VVCIPLLDGV VELGTTDRVP  180
EDLAFVQHVK TFFVDHHHLP PPKPALSEHS TSNPATSSDH HPRFHSPHLT AIRNNAAANN  240
PPPLHAAAQE DDEDEDEEED DEGESDSEAE TGRNGNGRPL PPAGTNVPAA EPSELMQLEM  300
SEDIRLGSPD DASNNLDSDF HMLAVSQSAN AADQQRQADS YRAESARRWP PVQPPMSAVQ  360
PPPSGPLALE ELNHDDTHYS ETVSTILQTQ ATRWTDSSSN DYVTYSSQSA FAKWTSRADH  420
HLLLPVEGAS QWLLKYILFS VPFLHTKYRD ENSPKSSHDG EGSTRLRKGT SQDELSANHV  480
LAERRRREKL NERFIILRSL VPFVTKMDKA SILGDTIEYV KQLRKKIQDL EARNVHLEDD  540
QQRTRSLGEI QRSSSMKELR SGLTVTERSR VGPPGSDKRK LRIVEGSGGV AVAKPKAVEE  600
PTPPPPPPAP ELTPPTPMLT GTSLEVSIIE SDGLLELQCP YREGLLLDVM QTLRDLRIET  660
TVVQSSLNSG NFVAELRAKV GKKTTITQVK RAVNQVIPHI CKGGLLDALR LSPREASPIR  720
LRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-211019312192Transcription factor MYC3
4rqw_B1e-211019312192Transcription factor MYC3
4rs9_A1e-211019312192Transcription factor MYC3
4yz6_A1e-211019312192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1482487ERRRRE
2483488RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9892840.0JQ989284.1 Fragaria x ananassa transcription factor bHLH3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004290663.10.0PREDICTED: basic helix-loop-helix protein A isoform X1
SwissprotE3SXU40.0BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLI3WCS50.0I3WCS5_FRAAN; Transcription factor bHLH3
STRINGVIT_07s0104g00090.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36373249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-104bHLH family protein